PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 562aa    MW: 61443.3 Da    PI: 5.3166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57820.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41e-12395440454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  EPS57820.1 395 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 440
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-524188IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19392466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-15394445No hitNo description
Gene3DG3DSA:4.10.280.102.0E-19395462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
QENLQQRLSA LIDGARECWT YAIFWQNSAA DFGLPPSALS WGDGYYKGEE DKEKRKTASS  60
YAEQEHRKKV LRELNSLVSG QQASSPDDDG AAVDEEVTDT EWFFLISMTQ TFENGSGIPG  120
QAMFASSPVW VAGPERLAEA NCDRARQALG YGLRTLVCIP SSNGVVELGS TSVIFQSSDL  180
VRKVKSLFNF NCTDDASVSG TGSWGTGDGD PAALWLTDHP SSSGVEAKQQ MVFGNENPKS  240
MADNSIFLSS RDLNFSDFRF GGSIAATMKN TAPPCKPESG EILNFGEATS TKTNLFTPQP  300
DNNNTTVSKT KKRSPQSRGS NEEGILSFTS AVIAPSSSGI PKTDNTGGCN VESDDHSDLE  360
ASIVKGADSS RVFDPEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN  420
VSKMDKASLL GDAISYINEL KSKLQNSEMD VDELRSQLES LKKEHNDSDP PTGYTTASAT  480
NNVSVDIEVK IIGRDAMIQV QCGKRNHPAA QLMTAFRELD LDVHHASVSV VNELMIQQAT  540
VKMGSKYFTQ DHLRLALMSK LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-6211916195Transcription factor MYC3
4rqw_B1e-6211916195Transcription factor MYC3
4rs9_A1e-6211916195Transcription factor MYC3
4yz6_A1e-6211916195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376384KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082365.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLS8BT830.0S8BT83_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000452040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-161bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]